HsaALTA1032638-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000144029 | MRPS5
Description
mitochondrial ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:14498]
Coordinates
chr2:95123431-95149434:-
Coord C1 exon
chr2:95148885-95149434
Coord A exon
chr2:95123617-95123826
Coord C2 exon
chr2:95123431-95123616
Length
210 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTTGCTTTGGGCCTTAACAGAGT
3' ss Score
6.4
Exon sequences
Seq C1 exon
TGGAGAGAAACCCTACAAATGTAATGAGTGTGGAAGGGCCTTTGCTCATACTGCATCCCTTATTAAACATCAGAGAAGTCATGCTGGAAAAAAAACCCTATAAATTCAGTGAATATAGAAGGGCTTTCAGCTGGAGTGCAGACATCACTGGAACTTAAAGAATTCATATCAGAGAGAGATCCTAAAGGTGTAATGTATGTGGGAAGACCACATCTTGTTCCACATCAGGCAATAATTACTAAAGAGAATCCCTGTCAATGTCAAGAGGGGGTGGGCTTCCCCTCTCTTACCAAACATGGGAGAATCCATACTAGTGAGAAACCACGTGAATGTAATGAATGTGGGAACGCTTTGATCAGAGGATGCATATTATTCAGCATCAGACAGCCGACACTGGGGAGGAGCCTTATCAATGCAGTGAGTGTGGCAAGCCTTCAGTTACATACTGATTCTTTAAGAAAATCAGATAACTTGTACTGGAGAGAAATCCTACAAGTGTG
Seq A exon
AGTCTGGAGGCTTGACCATTGACCAGCAACTTACCATGCAGTTTAAGCTGCTCATCATGAACTGGCTGTTGTATGATCACCAAGCCATAAAGTTGTGTGTGCACAGCAACACTCCATCATCGAATGGAAGTGGTACATATGAAACTGAACTGGAGCAGGACCTGAACATGCAAGCTACATGATCTTCTCTCTCTCAACCCCTACCCACAG
Seq C2 exon
CTTCATGAGGAATTACCTGTGACCAGTTGCCTGAAGAAGAAAACTCTTGGGCTTGGTTTACTCATGGTTCTGCATGATCTGTTGGTATCACCTGAAAGTGGACAGCTGCAGTACTGCAATCCCACTCTGGGATGCTTCTGAAGGACGGCGGTGAAGGGAAATCCTCCCAGTGGGAAGAAGATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144029-0-6,0-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACGCTTTGATCAGAGG
R:
CGTCCTTCAGAAGCATCCCAG
Band lengths:
306-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains