HsaEX1045173 @ hg38
Exon Skipping
Gene
ENSG00000144026 | ZNF514
Description
zinc finger protein 514 [Source:HGNC Symbol;Acc:HGNC:25894]
Coordinates
chr2:95122146-95149645:-
Coord C1 exon
chr2:95148885-95149645
Coord A exon
chr2:95136661-95136767
Coord C2 exon
chr2:95122146-95123826
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTAATAACTTCCAGTTTCAGTTT
3' ss Score
2.49
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGGAGAGAAACCCTACAAATGTAATGAGTGTGGAAGGGCCTTTGCTCATACTGCATCCCTTATTAAACATCAGAGAAGTCATGCTGGAAAAAAAACCCTATAAATTCAGTGAATATAGAAGGGCTTTCAGCTGGAGTGCAGACATCACTGGAACTTAAAGAATTCATATCAGAGAGAGATCCTAAAGGTGTAATGTATGTGGGAAGACCACATCTTGTTCCACATCAGGCAATAATTACTAAAGAGAATCCCTGTCAATGTCAAGAGGGGGTGGGCTTCCCCTCTCTTACCAAACATGGGAGAATCCATACTAGTGAGAAACCACGTGAATGTAATGAATGTGGGAACGCTTTGATCAGAGGATGCATATTATTCAGCATCAGACAGCCGACACTGGGGAGGAGCCTTATCAATGCAGTGAGTGTGGCAAGCCTTCAGTTACATACTGATTCTTTAAGAAAATCAGATAACTTGTACTGGAGAGAAATCCTACAAGTGTG
Seq A exon
TTTTCAGGTATCATCCATCATAAACAACAACAAAAATATTAGGCCATGGTTGTCACAGGAGTCTCTGATGGATCTGAGGTACAGAAAGTTCCATAACTTTCTGTTAG
Seq C2 exon
AGTCTGGAGGCTTGACCATTGACCAGCAACTTACCATGCAGTTTAAGCTGCTCATCATGAACTGGCTGTTGTATGATCACCAAGCCATAAAGTTGTGTGTGCACAGCAACACTCCATCATCGAATGGAAGTGGTACATATGAAACTGAACTGGAGCAGGACCTGAACATGCAAGCTACATGATCTTCTCTCTCTCAACCCCTACCCACAGCTTCATGAGGAATTACCTGTGACCAGTTGCCTGAAGAAGAAAACTCTTGGGCTTGGTTTACTCATGGTTCTGCATGATCTGTTGGTATCACCTGAAAGTGGACAGCTGCAGTACTGCAATCCCACTCTGGGATGCTTCTGAAGGACGGCGGTGAAGGGAAATCCTCCCAGTGGGAAGAAGATAAGAGTAATGTGCCTGGTTGTTCATTTTGCCTGGTTAGAAGTATAGATCTATACTTTTTCATGAGCAGTGGCTAATGACTTGGCTGGATGGTCAGTACTTGAGAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144026_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTGGCAAGCCTTCAGTT
R:
TTCAGGTCCTGCTCCAGTTCA
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains