HsaALTA1032731-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161942792-161947682:+
Coord C1 exon
chr2:161942792-161942897
Coord A exon
chr2:161947566-161947671
Coord C2 exon
chr2:161947672-161947682
Length
106 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TGTTTTACTTCCTCTGGCAGGAA
3' ss Score
9.46
Exon sequences
Seq C1 exon
GTGTAACTGTGTGGAACCGCATAATCCCAGCAATGGCACATTGAAGGAATGGAGGGAATCCAATATTTCTGCCTCTGACATAATTTGGGAGAACCTAACTGTGTCA
Seq A exon
GAATGCAAATCATTGCATGGAGAGTATGTTGGACGGGCCTGTGGCCATGATCACCCATATGTTCCAGATGTTCTATTTTGGTCTGTGATCCTGTTCTTTTCCACAG
Seq C2 exon
TTACTCTGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-53-56,53-55-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(6.8=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains