RnoALTA0037126-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48243239-48246694:+
Coord C1 exon
chr3:48243239-48243344
Coord A exon
chr3:48246533-48246638
Coord C2 exon
chr3:48246639-48246694
Length
106 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TGTGTTTCCCTTCCTCTCAGGAG
3' ss Score
10.42
Exon sequences
Seq C1 exon
GTGTAACTGTATGGAGCCACACAGTCCCAGCAATGACACACTGAAGGAGTGGCGCGAGTCCAACATTTCTGCCTCTGACATAATTTGGGGGAACCTAACTGTGTCA
Seq A exon
GAGTGCAGATCACTCCACGGGGAATATGTCGGGCGAGCCTGTGGCCATGGCCACCCGTATGTGCCGGACGTTCTCTTCTGGTCAGTGATCCTGTTCTTCTCCACAG
Seq C2 exon
TTACTATGTCAGCCACCCTGAAGCAGTTCAAGACCAGCCGGTATTTCCCCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-28-34,28-33,28-32-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(6.8=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAACTGTATGGAGCCACACA
R:
CTTAGTGGGGAAATACCGGCTG
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]