HsaALTA1032922-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:29988143-29991161:+
Coord C1 exon
chr3:29988143-29988223
Coord A exon
chr3:29991082-29991108
Coord C2 exon
chr3:29991109-29991161
Length
27 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTTCTTATTTGCCTCCTTAGGGT
3' ss Score
9.89
Exon sequences
Seq C1 exon
TATATGACTGCTGCTGCTCCTATGCAAGGGACCTACATTCCTCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
GGTGTTGTTGCTGATACCTCTCCCCAG
Seq C2 exon
ACAGTGGCACCTTCATCCCAGGACACCAGTGGTCAGCAGCAACAGATAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642-64-82,64-81-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCTATGCAAGGGACCT
R:
ATCTGTTGCTGCTGACCACTG
Band lengths:
115-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains