MmuALTA0015005-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116491856-116495213:-
Coord C1 exon
chr9:116495136-116495213
Coord A exon
chr9:116491957-116491983
Coord C2 exon
chr9:116491856-116491956
Length
27 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTACCGATTTGCCTCTTTAGGGT
3' ss Score
9.16
Exon sequences
Seq C1 exon
TATATGACTGCTGCTCCTATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
GGTGTTGTTGCTGATACCTCTCCCCAG
Seq C2 exon
ACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCACCGGCATACTCCTTCCAACAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607-20-22,20-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.994
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTCCCCAGTACACGCCT
R:
GTTCACTGGGTGTGTCCACTG
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: