HsaALTA1033278-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16672689-16673889:-
Coord C1 exon
chr5:16673682-16673889
Coord A exon
chr5:16672826-16673096
Coord C2 exon
chr5:16672689-16672825
Length
271 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CGCTTTTCCTGTTAATATAGGTT
3' ss Score
7.12
Exon sequences
Seq C1 exon
GATACGGGAACAGTTTCCAGGAAGCGAGATGGAAAAATACGCTCTCTTCACTTACGAATCTCTTAAGAAAACCAAATGCCGAGAGTTTGTGCCTTCCCGAGATGAAATAGAAGCTCTGATCCACAGGCAGGAAATGACATCCACGGTCTATTGCCATGGCGGCGGCTCCTGCAAGATCACCATCAACTCCCACACCACCGCTGGGGAG
Seq A exon
GTTTGCAAGAAATCAGCCCAGCATCTGCCTCTACCGATGGGCAAAATACCCTGAGTTATTTTCAGCAAGAAAGAGATAAACCTAATCTCAAGAGAACAAAGGGAAAATAGTACTTTTGAAATTCTGGGATGACCACACGGGTAACATTTTTAGGAGGCTGGAGACGCCCTTGTGCCAGCAGCTCCCTCTGGGATCAGGTGATGGCACGTTCTGGGAACACGTGTTGGGGCCGCAGCCTGTGGAACTGAAGTCCCCCTGGTGTGTCTTCCAG
Seq C2 exon
GTGGTGGAGAAGCTGATCCGAGGCCTGGCCATGGAGGACAGCAGGAACATGTTTGCTTTGTTTGAATACAACGGCCACGTCGACAAAGCCATTGAAAGTCGAACCGTCGTAGCTGATGTCTTAGCCAAGTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-126-113,126-112-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(35.4=57.1),PF0078818=RA=PU(34.7=35.7)
A:
NA
C2:
PF0078818=RA=FE(62.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCAGGAAGCGAGATGGA
R:
ACGGTTCGACTTTCAATGGCT
Band lengths:
303-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains