HsaALTA1033278-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16672689-16673889:-
Coord C1 exon
chr5:16673682-16673889
Coord A exon
NA
Coord C2 exon
chr5:16672689-16672825
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCCCCTGGTGTGTCTTCCAGGTG
3' ss Score
12.71
Exon sequences
Seq C1 exon
GATACGGGAACAGTTTCCAGGAAGCGAGATGGAAAAATACGCTCTCTTCACTTACGAATCTCTTAAGAAAACCAAATGCCGAGAGTTTGTGCCTTCCCGAGATGAAATAGAAGCTCTGATCCACAGGCAGGAAATGACATCCACGGTCTATTGCCATGGCGGCGGCTCCTGCAAGATCACCATCAACTCCCACACCACCGCTGGGGAG
Seq A exon
NA
Seq C2 exon
GTGGTGGAGAAGCTGATCCGAGGCCTGGCCATGGAGGACAGCAGGAACATGTTTGCTTTGTTTGAATACAACGGCCACGTCGACAAAGCCATTGAAAGTCGAACCGTCGTAGCTGATGTCTTAGCCAAGTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-126-113,126-112-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(35.4=57.1),PF0078818=RA=PU(34.7=35.7)
A:
NA
C2:
PF0078818=RA=FE(62.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCAGGAAGCGAGATGGA
R:
ACGGTTCGACTTTCAATGGCT
Band lengths:
303-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains