MmuALTA0011549-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25735266-25736434:+
Coord C1 exon
chr15:25735266-25735473
Coord A exon
NA
Coord C2 exon
chr15:25736298-25736434
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
GCCCCTGATGTGTCTTCCAGGTG
3' ss Score
11.08
Exon sequences
Seq C1 exon
GATACGGGAACAGTTCCCAGGAACCGAGATGGAGAAGTACGCCCTCTTTATCTACGAATCCCTTAAGAAAACCAAATGCAGAGAGTTTGTGCCTTCCCGAGATGAAATCGAAGCTCTGATCCACCGGCAGGAAATGACGTCCACAGTGTATTGCCATGGCGGAGGCTCCTGCAAGATCACCATCAACTCCCACACCACAGCCGGGGAG
Seq A exon
NA
Seq C2 exon
GTGGTGGAGAAGCTGATCCGAGGGCTCGCCATGGAGGACAGCAGGAACATGTTTGCCTTGTTTGAGTACAACGGACAGGTGGACAAGGCCATCGAAAGCCGGACCATCGTAGCTGACGTCCTGGCAAAGTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-57-53,57-52-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(35.4=57.1),PF0078818=RA=PU(34.7=35.7)
A:
NA
C2:
PF0078818=RA=FE(62.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAATGACGTCCACAGT
R:
TGTCCACCTGTCCGTTGTACT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: