HsaALTA1033283-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16779545-16780608:-
Coord C1 exon
chr5:16780524-16780608
Coord A exon
chr5:16779646-16779648
Coord C2 exon
chr5:16779545-16779645
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATGTTTTTGTCTTTCTGTAGAAG
3' ss Score
9.65
Exon sequences
Seq C1 exon
AACCGAGTAGTAAGGCAAAATCCCGGGGAAAGGAATTATCACATATTTTATGCACTGCTGGCAGGGCTGGAACATGAAGAAAGAG
Seq A exon
AAG
Seq C2 exon
AATTTTATTTATCTACGCCAGAAAACTACCACTACTTGAATCAGTCTGGATGTGTAGAAGACAAGACAATCAGTGACCAGGAATCCTTTAGGGAAGTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-59-41,59-40-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAATCCCGGGGAAAGGAA
R:
AGTAGTGGTAGTTTTCTGGCGT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains