RnoALTA0025335-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:77988400-77989959:+
Coord C1 exon
chr2:77988400-77988484
Coord A exon
chr2:77989856-77989879
Coord C2 exon
chr2:77989880-77989959
Length
24 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTTTCTTTGTCTTTCTGTAGAAG
3' ss Score
10.28
Exon sequences
Seq C1 exon
AACCGAGTAGTGAGGCAAAACCCCGGGGAGAGGAATTATCACATATTCTATGCACTGCTGGCAGGGCTGGACCAGGGAGAACGAG
Seq A exon
AAGAGTTTTATTTATCTTTGCCAG
Seq C2 exon
AAAACTATCATTACTTGAATCAGTCTGGGTGTACAGAAGACAAGACAATCAGCGACCAGGAGTCGTTCAGACAAGTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-14-14,14-13,14-12-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGGGGAGAGGAATTATC
R:
TGTCTTCTGTACACCCAGACTGA
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]