HsaALTA1033991-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000147274 | RBMX
Description
RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:HGNC:9910]
Coordinates
chrX:136879017-136880725:-
Coord C1 exon
chrX:136880597-136880725
Coord A exon
chrX:136879124-136879158
Coord C2 exon
chrX:136879017-136879123
Length
35 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGT
5' ss Score
10.49
3' ss Seq
GGTTATTTCATTTGACCTAGGGT
3' ss Score
5.77
Exon sequences
Seq C1 exon
CTCGTTGCGCAGTAGTGCTAGCGGCTTCGCGGTTCGGTCCTCGCACCCGGCAGCCGCCACTGGTGCTGAGCTGCTAGGAAGCCCCTATCGCCGAGCTCGTTGGAGCTTGAACCCATTGTCACCCCTCCG
Seq A exon
GGTAACACTTTATTTTTCTGAAAACTACTTTTTAG
Seq C2 exon
TACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTTGTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147274-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.436
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=FE(49.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGAACCCATTGTCACCC
R:
GTCTCTGGCTGCATCCTTAGC
Band lengths:
121-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains