HsaALTA1033991-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000147274 | RBMX
Description
RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:HGNC:9910]
Coordinates
chrX:136879017-136880725:-
Coord C1 exon
chrX:136880597-136880725
Coord A exon
NA
Coord C2 exon
chrX:136879017-136879123
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGT
5' ss Score
10.49
3' ss Seq
TTCTGAAAACTACTTTTTAGTAC
3' ss Score
2.17
Exon sequences
Seq C1 exon
CTCGTTGCGCAGTAGTGCTAGCGGCTTCGCGGTTCGGTCCTCGCACCCGGCAGCCGCCACTGGTGCTGAGCTGCTAGGAAGCCCCTATCGCCGAGCTCGTTGGAGCTTGAACCCATTGTCACCCCTCCG
Seq A exon
NA
Seq C2 exon
TACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTTGTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147274-0-3,0-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.436
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=FE(49.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGAACCCATTGTCACCC
R:
GTCTCTGGCTGCATCCTTAGC
Band lengths:
121-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains