RnoALTA0033362-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000866 | Rbmx
Description
RNA binding motif protein, X-linked [Source:RGD Symbol;Acc:1565256]
Coordinates
chrX:159889671-159890079:-
Coord C1 exon
chrX:159889964-159890079
Coord A exon
chrX:159889764-159889777
Coord C2 exon
chrX:159889671-159889763
Length
14 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACCCCCATAACTGTTTTTAGTGC
3' ss Score
4.71
Exon sequences
Seq C1 exon
AGGAAAGATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTTATTGGTGGGCTTAATACAGAAACAAATGAGAAAGCCCTGGAGGCAGTGTTTGGCAAATATGGACGAATAGTGGAAG
Seq A exon
TGCTTTTGATGAAG
Seq C2 exon
GACCGAGAAACCAATAAGTCAAGAGGATTTGCTTTTGTCACATTTGAAAGCCCAGCAGATGCAAAGGATGCTGCCAGAGACATGAATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000866-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.722
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(38.0=73.0)
A:
NA
C2:
PF0007617=RRM_1=FE(49.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTTTGGCAAATATGGACG
R:
TGCATCTGCTGGGCTTTCAAA
Band lengths:
97-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]