HsaALTA1034378-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000148384 | INPP5E
Description
inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr9:136432479-136433075:-
Coord C1 exon
chr9:136432956-136433075
Coord A exon
chr9:136432584-136432586
Coord C2 exon
chr9:136432479-136432583
Length
3 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CCCCATTTCTGTTCCCACAGCAG
3' ss Score
8.23
Exon sequences
Seq C1 exon
AGGTGGAGTGCTCCACGGTGACCACACGCATCGTGTCTCAGATCAAGACCAAGGGGGCCTTGGGCATCAGCTTCACCTTTTTTGGCACTTCCTTCCTCTTCATCACGTCCCACTTCACCT
Seq A exon
CAG
Seq C2 exon
GTGACGGGAAGGTGGCGGAGCGGCTGCTGGACTACACCAGGACTGTACAAGCCCTGGTCCTGCCCAGAAATGTGCCCGACACCAACCCCTATCGCTCCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148384-8-10,8-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(14.2=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCTCTTCATCACGTCCC
R:
CAGGACCAGGGCTTGTACAGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains