HsaEX0031785 @ hg38
Exon Skipping
Gene
ENSG00000148384 | INPP5E
Description
inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr9:136432479-136433279:-
Coord C1 exon
chr9:136433155-136433279
Coord A exon
chr9:136432956-136433075
Coord C2 exon
chr9:136432479-136432586
Length
120 bp
Sequences
Splice sites
3' ss Seq
GAGGGCTGCCCCTCCCACAGAGG
3' ss Score
5.46
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCGGGAGTGGGAGACTCGTCTGCAGGAGACGCTGGGCCCGCACTATGTGCTGCTGTCCTCGGCGGCCCACGGCGTGCTCTACATGTCGCTCTTCATCCGCAGGGACCTCATCTGGTTCTGCTCAG
Seq A exon
AGGTGGAGTGCTCCACGGTGACCACACGCATCGTGTCTCAGATCAAGACCAAGGGGGCCTTGGGCATCAGCTTCACCTTTTTTGGCACTTCCTTCCTCTTCATCACGTCCCACTTCACCT
Seq C2 exon
CAGGTGACGGGAAGGTGGCGGAGCGGCTGCTGGACTACACCAGGACTGTACAAGCCCTGGTCCTGCCCAGAAATGTGCCCGACACCAACCCCTATCGCTCCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148384_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(14.9=100)
A:
PF0337218=Exo_endo_phos=FE(14.2=100)
C2:
PF0337218=Exo_endo_phos=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTCGTCTGCAGGAGAC
R:
CTGGAGCGATAGGGGTTGGT
Band lengths:
219-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development