RnoEX0044224 @ rn6
Exon Skipping
Gene
ENSRNOG00000019039 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:RGD Symbol;Acc:620478]
Coordinates
chr3:3846209-3847212:-
Coord C1 exon
chr3:3847088-3847212
Coord A exon
chr3:3846547-3846666
Coord C2 exon
chr3:3846209-3846316
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCCGTTCCTTGTCCTGCAGAGG
3' ss Score
9.53
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCGGGAATGGGAGACACGCTTGCAGGAGACACTGGGCCCTCAGTATGTACTGCTGTCATCAGCAGCACATGGGGTCCTGTACATGTCCCTGTTTATCCGTAGGGACCTCATCTGGTTCTGCTCAG
Seq A exon
AGGTCGAGTACTCCACAGTAACTACACGCATCGTGTCTCAGATCAAGACCAAAGGGGCCCTGGGCGTCAGCTTCACCTTTTTTGGCACCTCCTTCCTCTTCATCACATCTCACTTCACCT
Seq C2 exon
CTGGAGATGGGAAGGTAGCAGAGCGGCTACTGGACTACAACAGAACCATCCAAGCCCTCGCCTTGCCCCGGAATGTGCCAGACACAAACCCCTACCGCTCTAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019039_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(14.9=100)
A:
PF0337218=Exo_endo_phos=FE(14.2=100)
C2:
PF0337218=Exo_endo_phos=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATGGGAGACACGCTTG
R:
ACTAGAGCGGTAGGGGTTTGT
Band lengths:
227-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]