DreEX0039473 @ danRer10
Exon Skipping
Gene
ENSDARG00000103926 | inpp5e
Description
inositol polyphosphate-5-phosphatase [Source:ZFIN;Acc:ZDB-GENE-050809-23]
Coordinates
chr5:64382587-64385715:-
Coord C1 exon
chr5:64385591-64385715
Coord A exon
chr5:64383422-64383541
Coord C2 exon
chr5:64382587-64382748
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTCTGACATTACAGAGG
3' ss Score
5.87
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAGGGAGTGGGAGATCCGTCTGCAGGAAACTCTTGGGCCATATTACGTGATGCTGTATGCAGCAGCCCATGGAGTGCTCTATCTCACTGTATTTGTCAGGAGAGACCTCATATGGTTTTGTTCAG
Seq A exon
AGGTGGAACATGCTACAGTCACAACCAGAATTATATCTCAGATTAAGACTAAAGGAGCAGTGGGCATCGGCTTCACCTTCTTCGGGACGTCCTTCCTCTTTGTCACTTCCCATTTCACCT
Seq C2 exon
CTGATGTCACGACCCGTTTTGATGAAGTCTTCTGGTTTGGAGATTTCAACTTCCGCCTGAATAAAGCCAGAGGAGACGTGGAGGCCATTTTAAATCAGGGCGTTGGCGTTGATATGAGCCCGTTATTACAACATGATCAGCTGACGAGAGAGATGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103926_MULTIEX1-4/8=3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(14.9=100)
A:
PF0337218=Exo_endo_phos=FE(14.2=100)
C2:
PF0337218=Exo_endo_phos=FE(19.2=100)
Main Skipping Isoform:
ENSDART00000167616fB3297
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGATCCGTCTGCAGGAAA
R:
TAACGGGCTCATATCAACGCC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]