GgaEX0002400 @ galGal3
Exon Skipping
Gene
ENSGALG00000001964 | INPP5E
Description
NA
Coordinates
chr17:8567648-8568540:+
Coord C1 exon
chr17:8567648-8567772
Coord A exon
chr17:8567927-8568046
Coord C2 exon
chr17:8568433-8568540
Length
120 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCTTTCTCCTTCCAGAAG
3' ss Score
10.71
5' ss Seq
CATGTGAGA
5' ss Score
3.73
Exon sequences
Seq C1 exon
AAGAGAGTGGGAAATCCGCCTCCAGGAGACGCTGGGCCCCCACTACGTCATGCTCTACTCTGCTGCGCACGGAGTGCTCTACATGTCAGTCTTCATTCGAAGGGACCTGATCTGGTTCTGCTCAG
Seq A exon
AAGTGGAATATGCCACAGTGACAACTCGAATCGTATCTCAGATCAAAACCAAGGGAGCTCTGGGAATCTGCTTCACGTTTTTTGGGACCTCCTTTCTCTTTATTACCTCCCATTTCACAT
Seq C2 exon
CTGGGGACAGTAAGGTGAATGAGAGGAAGCTGGACTACAATAAAACCATTCAAGCACTTACCCTTCCTAAGGTCGTTCCGGACACAAACCCCTATCGATCCAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001964_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(14.9=100)
A:
PF0337218=Exo_endo_phos=FE(14.2=100)
C2:
PF0337218=Exo_endo_phos=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAAATCCGCCTCCAG
R:
CAGAGCTGGATCGATAGGGGT
Band lengths:
227-347
Functional annotations
There are 0 annotated functions for this event