HsaALTA1034614-1/5 @ hg38
Alternative 3'ss
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46379203-46379568:+
Coord C1 exon
chr11:46379203-46379236
Coord A exon
NA
Coord C2 exon
chr11:46379495-46379568
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GACCTGTTTGCACCAAGCAGCGG
3' ss Score
1.24
Exon sequences
Seq C1 exon
CCCCCCCAGAGATCCTTGATGCGGTGGAGGAAAA
Seq A exon
NA
Seq C2 exon
CGGCCCTGGGCCAGCGCACCATCTGCCACTACATCGTGGAGGCCGGGGCCTCGCTCATGAAGACAGACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-63-101,63-100,63-98,63-97,63-96-1/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.436
Domain overlap (PFAM):
C1:
PF138571=Ank_5=FE(21.6=100),PF127962=Ank_2=PU(12.7=83.3)
A:
NA
C2:
PF138571=Ank_5=PD(3.9=5.1),PF127962=Ank_2=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCCTTGATGCGGTGGA
R:
GTCTGTCTTCATGAGCGAGGC
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains