HsaALTA1034614-3/5 @ hg38
Alternative 3'ss
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46379203-46379568:+
Coord C1 exon
chr11:46379203-46379236
Coord A exon
chr11:46379454-46379494
Coord C2 exon
chr11:46379495-46379568
Length
41 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GGGATGGGGTACACAGCCAGCCC
3' ss Score
-8.96
Exon sequences
Seq C1 exon
CCCCCCCAGAGATCCTTGATGCGGTGGAGGAAAA
Seq A exon
CCCCTGCTCCCCCAGCGGGGAGACCTGTTTGCACCAAGCAG
Seq C2 exon
CGGCCCTGGGCCAGCGCACCATCTGCCACTACATCGTGGAGGCCGGGGCCTCGCTCATGAAGACAGACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-63-101,63-100,63-98,63-97,63-96-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.436
Domain overlap (PFAM):
C1:
PF138571=Ank_5=FE(21.6=100),PF127962=Ank_2=PU(12.7=83.3)
A:
NA
C2:
PF138571=Ank_5=PD(3.9=5.1),PF127962=Ank_2=FE(48.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGATCCTTGATGCGGTGG
R:
GCTGGTCTGTCTTCATGAGCG
Band lengths:
100-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains