RnoALTA0011820-2/6 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80844920-80845265:-
Coord C1 exon
chr3:80845232-80845265
Coord A exon
chr3:80845020-80845033
Coord C2 exon
chr3:80844920-80845019
Length
14 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CTGGAAGTGTCTACAACCAGCCC
3' ss Score
-0.18
Exon sequences
Seq C1 exon
CACCACCAGAGATCCTCGATGCTGTGGAGGAGAA
Seq A exon
CCCCTGTTCCCCAG
Seq C2 exon
CGGGGAGACCTGTCTACACCAGGCAGCCGCCCTAGGTCAGCGCACCATCTGCCACTACATTGTGGAAGCCGGGGCCTCCCTCATGAAGACAGATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-55-69,55-68,55-67,55-66,55-65,55-64-2/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF138571=Ank_5=FE(19.3=100)
A:
NA
C2:
PF138571=Ank_5=FE(57.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAGATCCTCGATGCTGT
R:
CCCGGCTTCCACAATGTAGTG
Band lengths:
103-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]