MmuALTA0005410-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91933781-91934089:-
Coord C1 exon
chr2:91934056-91934089
Coord A exon
chr2:91933843-91933856
Coord C2 exon
chr2:91933781-91933842
Length
14 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CTGCAAGTGTCTACAACCAGCCC
3' ss Score
1.1
Exon sequences
Seq C1 exon
CACCTCCAGAGATCCTTGATGCTGTGGAGGAGAA
Seq A exon
CCCCTGTTCCCCAG
Seq C2 exon
TGGGGAGACCTGTCTACACCAGGCAGCCGCCCTGGGTCAGCGCACCATCTGCCACTACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-60-102,60-101,60-100,60-99-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.235
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(11.6=100)
A:
NA
C2:
PF127962=Ank_2=PD(32.6=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCAGAGATCCTTGATGCT
R:
CAGATGGTGCGCTGACCC
Band lengths:
84-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types