HsaALTA1035739-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000152061 | RABGAP1L
Description
RAB GTPase activating protein 1 like [Source:HGNC Symbol;Acc:HGNC:24663]
Coordinates
chr1:174275833-174278779:+
Coord C1 exon
chr1:174275833-174275935
Coord A exon
NA
Coord C2 exon
chr1:174278613-174278779
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
CCAGAAAATTTCTACTACAGATA
3' ss Score
4.17
Exon sequences
Seq C1 exon
GAATCCATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACTGGCATGTGGAACCCCAATGCACCAGTATTTCTGGCACTTAACGAGGAAACCCCAAAAG
Seq A exon
NA
Seq C2 exon
ATAAGCAAGTATACATGACTGTGGCAGTGGATATGGTAGTCACAGAGGTGGTGGAGCCTGTTCGCTTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAAATGAGCGATTTTGGTATTTCAGCAGAAAGACTTTCACAGAGACTTTCTTCATGAGATTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152061-47-37,47-36-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=PU(46.4=97.0)
A:
NA
C2:
PF124733=DUF3694=PD(27.1=64.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTTAACGAGGAAACCCC
R:
ACACGGACTACTGTCTCCAGG
Band lengths:
117-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains