RnoALTA0032774-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002736 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:RGD Symbol;Acc:1304620]
Coordinates
chr13:78462611-78464311:-
Coord C1 exon
chr13:78464209-78464311
Coord A exon
NA
Coord C2 exon
chr13:78462611-78462777
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
TCAGACATTTTCTATTGCAGATA
3' ss Score
9.35
Exon sequences
Seq C1 exon
GAGTCTATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACCGGCATGTGGAACCCCAACGCACCAATATTTCTGGCTCTTAATGAGGAAACGCCAAAAG
Seq A exon
NA
Seq C2 exon
ATAAACGGGTGTACATGACTGTTGCAGTGGACATGGTGGTCACAGAGGTGGTAGAGCCAGTCCGCTTTCTCCTGGAGACAGTAGTGCGTGTATACCCTGCAAATGAGAGATTTTGGTATTTCAGCAGAAAGACTTTTACAGAGACTTTCTTCATGAGGTTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002736-17-23,17-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(25.6=100)
A:
NA
C2:
PF124733=DUF3694=PD(27.1=64.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTATGTCATCACCGGCA
R:
CTGTTTCAACCTCATGAAGAAAGTCT
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]