RnoALTA0032774-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002736 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:RGD Symbol;Acc:1304620]
Coordinates
chr13:78462611-78464311:-
Coord C1 exon
chr13:78464209-78464311
Coord A exon
chr13:78462778-78462965
Coord C2 exon
chr13:78462611-78462777
Length
188 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
GCTTGCCTAGCAAGCACAAGGCC
3' ss Score
-13.89
Exon sequences
Seq C1 exon
GAGTCTATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACCGGCATGTGGAACCCCAACGCACCAATATTTCTGGCTCTTAATGAGGAAACGCCAAAAG
Seq A exon
GCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGGAGAAAGTATTTAGAAATACATATTTAGAAGGAAATATGCTTGTCTAGATATGTAATTCATGTGTAACTTAAGAGACTTTATTTTCTTCAGTAATCAAGGAATGATAAAACTCAGACATTTTCTATTGCAG
Seq C2 exon
ATAAACGGGTGTACATGACTGTTGCAGTGGACATGGTGGTCACAGAGGTGGTAGAGCCAGTCCGCTTTCTCCTGGAGACAGTAGTGCGTGTATACCCTGCAAATGAGAGATTTTGGTATTTCAGCAGAAAGACTTTTACAGAGACTTTCTTCATGAGGTTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002736-17-23,17-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(25.6=100)
A:
NA
C2:
PF124733=DUF3694=PD(27.1=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTATGTCATCACCGGCA
R:
CTGTTTCAACCTCATGAAGAAAGTCT
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]