HsaALTA1038189-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:95225961-95247087:+
Coord C1 exon
chr7:95225961-95226116
Coord A exon
NA
Coord C2 exon
chr7:95247000-95247087
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
CCTCCTCTCTCCCTTTGCAGTGG
3' ss Score
12.74
Exon sequences
Seq C1 exon
ACAGGAGAATATGCCACAGATGAAGAAGAAGATGAGGTAGGACCTGTCCTTCCTGGCAGCGACATGGCCATTGAAGTCTTTGAGCTGCCTGAGAATGAGGACATGTTTTCCCCATCAGAACTGGACACAAGCAAGCTCAGTCACAAGTTCAAAGAG
Seq A exon
NA
Seq C2 exon
TGGAGCTGCTGATCAGAATGTGCTTGCAACTCACAGGACCATAGCGCCACCTTTCTTGCAGATTTGGAATAAATCTTCACACGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-32-37,32-36-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENST00000433360fB5454
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGAATATGCCACAGATGA
R:
TGGACGTGTGAAGATTTATTCCA
Band lengths:
243-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains