HsaEX1029172 @ hg38
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:95225961-95247526:+
Coord C1 exon
chr7:95225961-95226116
Coord A exon
chr7:95245829-95245938
Coord C2 exon
chr7:95247473-95247526
Length
110 bp
Sequences
Splice sites
3' ss Seq
AAAATAACATTTCCACATAGGGT
3' ss Score
5.75
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
ACAGGAGAATATGCCACAGATGAAGAAGAAGATGAGGTAGGACCTGTCCTTCCTGGCAGCGACATGGCCATTGAAGTCTTTGAGCTGCCTGAGAATGAGGACATGTTTTCCCCATCAGAACTGGACACAAGCAAGCTCAGTCACAAGTTCAAAGAG
Seq A exon
GGTCCTACTCTAGAAACTGTTCAAGCATAGAAGCCCCTAGGAGCCGGTGAGGGTGCAAGGAGCAATAGCCACACCAGCAAGATGGCCAGAGTGACCAGGTCAGGAAGAAT
Seq C2 exon
TTGCAAATCAAACATGCAGTTACAGAAGCAGAGATTCAAAAATTGAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528_MULTIEX3-4/6=3-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=1.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000433360fB23232
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGAATATGCCACAGATGA
R:
TCAATTTTTGAATCTCTGCTTCTGT
Band lengths:
202-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains