HsaALTA1038258-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000158691 | ZSCAN12
Description
zinc finger and SCAN domain containing 12 [Source:HGNC Symbol;Acc:HGNC:13172]
Coordinates
chr6:28398277-28399734:-
Coord C1 exon
chr6:28399657-28399734
Coord A exon
chr6:28398382-28398473
Coord C2 exon
chr6:28398277-28398381
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AATGATGGCTTATTCTTCAGGAC
3' ss Score
7.18
Exon sequences
Seq C1 exon
TCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCTGGCCCTGGGGGCCGCAG
Seq A exon
GACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTAGCACAGCTAAAATGGCATCTACTTGGGCTATCCAG
Seq C2 exon
GCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATAGAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158691-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.231
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAAAAGGGTTCGAGGC
R:
TGGGTGTTGTTTTTACGCAGGT
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains