RnoALTA0046080-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000052959 | Zscan12
Description
zinc finger and SCAN domain containing 12 [Source:RGD Symbol;Acc:628738]
Coordinates
chr17:45284179-45284563:-
Coord C1 exon
chr17:45284532-45284563
Coord A exon
chr17:45284257-45284321
Coord C2 exon
chr17:45284179-45284256
Length
65 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
AATGATGACTTATCCCTTAGGTC
3' ss Score
8.15
Exon sequences
Seq C1 exon
TTAGTTGTGGTTTACTTTAGGAGTTAGTGGAG
Seq A exon
GTCTACTCGGTAAGAAAATTTACCAAGGAGTTATTACTTGAAACACTGATAAATCTTTTATATAG
Seq C2 exon
CTATGATGGCATCCACTAACGATACCAAGATCTGTAAGAACCAAGATGGACTTTTGGAAATAAAAATGGAGGAAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052959-3-2,3-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTTACTTTAGGAGTTAGTGGA
R:
ACTCTTCCTCCATTTTTATTTCCAAA
Band lengths:
105-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]