RnoEX0102285 @ rn6
Exon Skipping
Gene
ENSRNOG00000052959 | Zscan12
Description
zinc finger and SCAN domain containing 12 [Source:RGD Symbol;Acc:628738]
Coordinates
chr17:45283850-45285060:-
Coord C1 exon
chr17:45284892-45285060
Coord A exon
chr17:45284532-45284563
Coord C2 exon
chr17:45283850-45284256
Length
32 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTTTTTATTTCAGTTA
3' ss Score
9.63
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCTTCCGGTTCCTGGGCGAGCTGGGTTCTCTTCTCGGCGCAGGAGCTACGCGGTGAGCGAGCTCGTGCTCCAGGCTAGGGGAGAATGCTCGCTGCTACTTAGACTCGTTCGTAGAAAGAGGTTGGAAGCCAGGGAAAGGCCACCAGGGCCGCAGTGCGGTCGCCTACGG
Seq A exon
TTAGTTGTGGTTTACTTTAGGAGTTAGTGGAG
Seq C2 exon
CTATGATGGCATCCACTAACGATACCAAGATCTGTAAGAACCAAGATGGACTTTTGGAAATAAAAATGGAGGAAGAGTGTAAGTATACCACCAGACAAGTTAGGAACCTCCAAAAGAACACTTATAACAGAGACGTCTTCCGAAAATACTTCAGACAGTTTTGCTACCAGGAAACATCTGGACCCCGGGAGGCTTTGAGCCGACTCCGGGAACTTTGCCATCAGTGGTTGCGACCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAACAGTTCTTGACCATCCTGCCTGAGGAGCTGCAGGCCTGGGTGCAGGAGCAGAATCCTGAGAGTGTGGAGGAGGTAGTGACTGTGCTGGAGGATTTAGAGAGAGAACTAGATGAACTAGGATACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052959-'1-2,'1-0,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=69.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGCTGCTACTTAGACTCG
R:
TCTTGGTATCGTTAGTGGATGCC
Band lengths:
113-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]