MmuEX0054051 @ mm10
Exon Skipping
Gene
ENSMUSG00000036721 | Zscan12
Description
zinc finger and SCAN domain containing 12 [Source:MGI Symbol;Acc:MGI:1099444]
Coordinates
chr13:21362827-21364051:+
Coord C1 exon
chr13:21362827-21363175
Coord A exon
chr13:21363339-21363370
Coord C2 exon
chr13:21363580-21364051
Length
32 bp
Sequences
Splice sites
3' ss Seq
AAATTTTTTGTTTATTTCAGTTA
3' ss Score
8.04
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGTTCCTGGGAGGGCTGGATTCCCTTCCCTGCGCAGGAGCGACGCGGTGAGCGAGCTCGTGCTCCAGGCGGGGGGAGGGTGCTCCCTGCTACCTAGACTCTCGGCCTTAGAAAGATGCTTGGAACCGGGGGAAAGGCCACCCGGGCTGCGCTGCGGCTGCCTATGGGTCCCCCTGGGGCGCGGAGCTGGCCCGGACCTAGGCACGCTGCAGAACTTTAAGTTAGAGTCACAGAACTGGAGGGGCAGGAGAAAAGCAGAGCACCCTCCCCAACTTCTAACCTTTATGAGTGGTTAAGTTCCAACTAAAGCCAGTTGGGAGACTGTACTATGTATATGTGATTTGTGCCAG
Seq A exon
TTAGTTGTTGTTCACTTTAGGAGTAAGTGGAG
Seq C2 exon
GTCCACTGGGTAAGAAGATTTACCAAGGAGTTATTACTTGAAAGATTGATACATCTTTTATCTAGCTACGATGACATCTACTAGTGATACCAAGGTCTGTAAGAACCAGGGTGGACTTTTGGAAATAAAAATGGAGGAAGAATGTAAGTATACCACCAGACAAGATAGGAACCTACAAAAGAACACTTATAACAGAGACGTCTTCCGAAAATACTTCAGACAGTTTTGCTACCAGGAAACTTCTGGACCCCGGGAGGCTCTGAGCCGGCTGCGCGAGCTCTGCAGACAGTGGCTGCGGCCGGACTTGAACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCAGGAGCAGAATCCGGAGAGTGTGGAGGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAGCTTGATGAACTAGGATACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036721_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.030
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAAGCAGAGCACCCTCC
R:
GGTAAATCTTCTTACCCAGTGGAC
Band lengths:
127-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types