MmuEX0054051 @ mm9
Exon Skipping
Gene
ENSMUSG00000036721 | Zscan12
Description
zinc finger and SCAN domain containing 12 [Source:MGI Symbol;Acc:MGI:1099444]
Coordinates
chr13:21454696-21455920:+
Coord C1 exon
chr13:21454696-21454741
Coord A exon
chr13:21455208-21455239
Coord C2 exon
chr13:21455449-21455920
Length
32 bp
Sequences
Splice sites
3' ss Seq
AAATTTTTTGTTTATTTCAGTTA
3' ss Score
8.04
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGTTCCTGGGAGGGCTGGATTCCCTTCCCTGCGCAGGAGCGACGCG
Seq A exon
TTAGTTGTTGTTCACTTTAGGAGTAAGTGGAG
Seq C2 exon
GTCCACTGGGTAAGAAGATTTACCAAGGAGTTATTACTTGAAAGATTGATACATCTTTTATCTAGCTACGATGACATCTACTAGTGATACCAAGGTCTGTAAGAACCAGGGTGGACTTTTGGAAATAAAAATGGAGGAAGAATGTAAGTATACCACCAGACAAGATAGGAACCTACAAAAGAACACTTATAACAGAGACGTCTTCCGAAAATACTTCAGACAGTTTTGCTACCAGGAAACTTCTGGACCCCGGGAGGCTCTGAGCCGGCTGCGCGAGCTCTGCAGACAGTGGCTGCGGCCGGACTTGAACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCAGGAGCAGAATCCGGAGAGTGTGGAGGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAGCTTGATGAACTAGGATACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036721_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.030
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGATTCCCTTCCCT
R:
TCACTAGTAGATGTCATCGTAGCT
Band lengths:
122-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: