HsaALTA1038898-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46539877-46541895:+
Coord C1 exon
chr21:46539877-46539991
Coord A exon
NA
Coord C2 exon
chr21:46541756-46541895
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
ATGGTGGTTTTATTTTCTAGGCC
3' ss Score
9.37
Exon sequences
Seq C1 exon
GGTCGATCTCCTCCTGTGACGCCTTCCTCAACGTCTTCCAGTCCAGAGGTCTGAGGCCAGAGGTCATCTGTCCTTGTGCAAGTTCTCCTGAGGCGCTGACTGTCGCCATCCGCAG
Seq A exon
NA
Seq C2 exon
GCCACCTGATCTGGGAGGACCACCTCCAAGAAAAGCAGTCCTGTCGATGAACGGTCTAAGTTATGGTGTTATCAGAGTGGATACTGAAGAAAAGTTGTCAGTCCTTACTGTTCAGGACGTTGGTCAGGTGATGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-41-43,41-42-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGATCTCCTCCTGTGACG
R:
CATCACCTGACCAACGTCCTG
Band lengths:
248-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains