HsaALTA1038898-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46539877-46541895:+
Coord C1 exon
chr21:46539877-46539991
Coord A exon
chr21:46541445-46541755
Coord C2 exon
chr21:46541756-46541895
Length
311 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CTGTTTGCCGGGCTTCACAGGGC
3' ss Score
7.26
Exon sequences
Seq C1 exon
GGTCGATCTCCTCCTGTGACGCCTTCCTCAACGTCTTCCAGTCCAGAGGTCTGAGGCCAGAGGTCATCTGTCCTTGTGCAAGTTCTCCTGAGGCGCTGACTGTCGCCATCCGCAG
Seq A exon
GGCTCCAGGCGAGTGTCCCAAGACAATCGGGTAGAAGCTGAATTGACGTTACTGGCCTGCATTGGAAGTCACACAGCATCACAACCACTGTAGTCACAGGCCCTTTTCCCACTGAGTGGAGTGTCGACGTCACATTGCAGAGGGGCATGTAGTTTGGAGACATTGCAGCATCTTTAGAACATGCGTTTCTCACAAGTCTGTAACATGGAGCAGTGGCTTTGGTGCAGAATCATGCTGCAGGCAAGGTGGGCCCACCTCCCTGGAATTTCATCCCCCTCGTCAGTTAAACCCATGGTGGTTTTATTTTCTAG
Seq C2 exon
GCCACCTGATCTGGGAGGACCACCTCCAAGAAAAGCAGTCCTGTCGATGAACGGTCTAAGTTATGGTGTTATCAGAGTGGATACTGAAGAAAAGTTGTCAGTCCTTACTGTTCAGGACGTTGGTCAGGTGATGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-41-43,41-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGATCTCCTCCTGTGACG
R:
CATCACCTGACCAACGTCCTG
Band lengths:
248-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains