HsaALTA1038937-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000160352 | ZNF714
Description
zinc finger protein 714 [Source:HGNC Symbol;Acc:HGNC:27124]
Coordinates
chr19:21098185-21098910:+
Coord C1 exon
chr19:21098185-21098311
Coord A exon
NA
Coord C2 exon
chr19:21098815-21098910
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
ATTTACTTTTAATAAAGCAGGTA
3' ss Score
3.17
Exon sequences
Seq C1 exon
GAGACGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGGAATGCCTGAACCCTGCTCAGCAGAATTTATATATGAATGTGATGTTAGAGAACTACAAAAACCTGGTCTTCTTGG
Seq A exon
NA
Seq C2 exon
GTATTGCTGTCTCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAGAGCCCTGGAATATGAAGATATGTGAGATGGTGGATGAATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160352-7-8,7-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCCTGAACCCTGCTCAG
R:
CGGGTCTTGCTTAGAGACAGC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains