HsaEX0074252 @ hg38
Exon Skipping
Gene
ENSG00000160352 | ZNF714
Description
zinc finger protein 714 [Source:HGNC Symbol;Acc:HGNC:27124]
Coordinates
chr19:21098185-21123151:+
Coord C1 exon
chr19:21098185-21098311
Coord A exon
chr19:21098812-21098910
Coord C2 exon
chr19:21116807-21123151
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTATTTACTTTTAATAAAGCAG
3' ss Score
-0.7
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAGACGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGGAATGCCTGAACCCTGCTCAGCAGAATTTATATATGAATGTGATGTTAGAGAACTACAAAAACCTGGTCTTCTTGG
Seq A exon
CAGGTATTGCTGTCTCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAGAGCCCTGGAATATGAAGATATGTGAGATGGTGGATGAATCCCCAG
Seq C2 exon
CTATGTGTTCTTCTTTTACCAGAGACCTTTGGCCAGAGCAAGACATAAAAGATTCTTTTCAACAAGTGATACTGAGAAGACATGGCAAATGTGAACATGAGAATTTACAGTTAAGAAAAGGCTCCGCAAATGTGGTTGAGTGTAAGGTGTACAAAAAAGGTTATAATGAACTAAACCAGTGTTTGACAACTACCCAGAGCAAAATATTTCCATGTGATAAATATATAAAAGTCTTTCATAAAATTTTCAATTCAAATAGACACAAGACAAGACATACTGGAGAGAAACCTTTCAAATGTAAAAAATGTGATGAATCATTTTGCATGCTTTTACACCTACATCAACATAAAAGAATTCATATTAGAGAGAATTCTTACCAATGTGAAGAATGTGACAAAGTGTTTAAGCGGTTCTCAACCCTTACTAGACACAAGAGAGTTCATACTGGAGAGAAACCCTTCAAATGTGAAGAATGTGGCAAAGCTTTTAAGCACTCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160352-'7-15,'7-7,9-15
Average complexity
C2
Mappability confidence:
86%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.063
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACATTTAGGGATGTGGCCA
R:
ATGTCTTGCTCTGGCCAAAGG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development