RnoEX6009387 @ rn6
Exon Skipping
Gene
ENSRNOG00000042283 | Zfp267
Description
zinc finger protein 267 [Source:RGD Symbol;Acc:2323100]
Coordinates
chr2:122865100-122869616:+
Coord C1 exon
chr2:122865100-122865226
Coord A exon
chr2:122866051-122866146
Coord C2 exon
chr2:122867452-122869616
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTTCCAATCACCAGGTC
3' ss Score
7.98
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAACAGTTAACCTTCAGGGATGTGGCCATTGATTTCTCTGGAGAGGAATGGGAGTGTCTGAACTCTGAACAGCAGAATCTATATACAGATGTGATGTTGGAAAACTATAGGAACCTCGTCTTCCTGG
Seq A exon
GTCTTGCTGTGTCTAAGCCGTACCTGGTTACATGTCTGGAGCAAAGGAAAGAGCCCTGGAGTGTCAAGAGGCAGAAGCCTGTGGCCCTGTTCCCAG
Seq C2 exon
CTTTGTTTCCTCATCATAACCGAGACTTTTCACCAGAGCAGAACATAAACTATTCATTCCAGGAACTCATCCATGGACCTCGTGGAGATTGTGGCTTTGACAGTTTGTACTTCCCAGAAGAAAGGGAACTTGTAGAGGACGGTGACATCCTGGGAACCTGTTATAACAGGCATGACCCATTTCTGACAGCTGACAACAGCAAAAGCTTTACTCCCAGGAGAGATCAGGAACAAGAAATGGCTCACAAAAACTCTCAGGTTAGGCAAGTTACTAGTGAGGAGCCATGTGGTTCTGTCAGCAAACATCAGAATCAGTCTTTGAAACCTACCTCTTATTTCAAAGATAATTTGGGAACTCCACAAAGGGGTCTACTTCATTCTTCAGCTAATGACTTCAACAATTTCAAATGTAGCTTTGGGTTGAGCTTTCATTCAAACATTTTTGTAGATGGGGAACTTAAAAACAAAGGAAAAAATTCTAAATGTAATCAATTTGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042283-'0-3,'0-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF097235=Zn-ribbon_8=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6)
Main Skipping Isoform:
ENSRNOT00000067090fB16897
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGGAATGGGAGTGTCT
R:
TCCACGAGGTCCATGGATGAG
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]