MmuEX6059057 @ mm9
Exon Skipping
Gene
ENSMUSG00000069206 | Zfp874a
Description
zinc finger protein 874a [Source:MGI Symbol;Acc:MGI:3040703]
Coordinates
chr13:67527195-67549852:-
Coord C1 exon
chr13:67549757-67549852
Coord A exon
chr13:67532386-67532481
Coord C2 exon
chr13:67527195-67527301
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTTTAACAAACAGGTC
3' ss Score
9.55
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCTTGCTGTTGCTAAACCATACTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCAG
Seq A exon
GTCTTGCCGTCACTAAGCCATACTTGGTAACATGTCTGGAGCGAAACCAAGCGTCTTCAGGTGTGAAACGACAAAGAGCAGGCACCGTGCCTCCAG
Seq C2 exon
GAATAACAGGCAATGAGACAAGTTCAAGACAGTTCATACTGGAGAGAAACCCTACAAGTGTGGGAAGTGGTTTTCCTCTTTTAAATCCCTTAAAAGACATCAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069206-'3-7,'3-5,7-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=0.394 C2=0.286
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGCTAAACCATACTTGG
R:
AGGAAAACCACTTCCCACACT
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: