MmuEX6059057 @ mm10
Exon Skipping
Gene
ENSMUSG00000069206 | Zfp874a
Description
zinc finger protein 874a [Source:MGI Symbol;Acc:MGI:3040703]
Coordinates
chr13:67429430-67448916:-
Coord C1 exon
chr13:67448821-67448916
Coord A exon
chr13:67431450-67431545
Coord C2 exon
chr13:67429430-67429483
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTTTAACAAACAGGTC
3' ss Score
9.55
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCTTGCTGTTGCTAAACCATACTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCAG
Seq A exon
GTCTTGCCGTCACTAAGCCATACTTGGTAACATGTCTGGAGCGAAACCAAGCGTCTTCAGGTGTGAAACGACAAAGAGCAGGCACCGTGCCTCCAG
Seq C2 exon
TATCTATTTCCTCTCTGGTCTTCTGGCCTAGGTGGCCTGTATTTACGGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069206_MULTIEX1-3/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.242 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000057241fB20032
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGCTAAACCATACTTGG
R:
TCACCGTAAATACAGGCCACC
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types