BtaEX6083987 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr18:60461310-60466851:-
Coord C1 exon
chr18:60466722-60466851
Coord A exon
chr18:60466132-60466227
Coord C2 exon
chr18:60461310-60461427
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTCTGATGAACAGGTC
3' ss Score
7.59
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CAGGGATGGCTGACATTCCGGGATGTGGCCATAGACTTCACTCAAGAGGAGTGGGAATGCCTGGACCTCGGTCAGCGGGAATTGTACAGGGACGTGATGATAGAGAACTATAGGAACCTGGCCTGCTTGG
Seq A exon
GTCTTGTGGTCTCTAAGCCAGATTTGGTCACCTTTCTGGAGCAAATGAAGGATCTCAGGAATATAAGGAGAATGGAGACAATAGGCATATACCCAG
Seq C2 exon
CTATATCTCCTCAAGACACCCAGGATTTGATGCCAAAGAAACCAAGGGTAGAAGATTTGTTCCCAAAAGCAAACCTAGGAATATATGAAAGATTTCACCTCAGAAACTTGGAATTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030444-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTGACATTCCGGGATG
R:
ACCCTTGGTTTCTTTGGCATCA
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]