Special

MmuEX0053586 @ mm9

Exon Skipping

Gene
ENSMUSG00000069184 | Zfp72
Description
zinc finger protein 72 [Source:MGI Symbol;Acc:MGI:3033356]
Coordinates
chr13:74508874-74514014:-
Coord C1 exon
chr13:74513884-74514014
Coord A exon
chr13:74512416-74512511
Coord C2 exon
chr13:74508874-74510275
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCCATTTTTCTACAAACAGGTC
3' ss Score
8.76
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CCAGGGGTGGTTGTCATTCAGAGATGTGGCCATTGATTTCTCTGCAGAGGAATGTGAATGCCTGGACGCTGCTCAGTGGGATTTGTATAGCGATGTGATGTTGGAGAATTACAGCAACCTTGTCTCTCTGG
Seq A exon
GTCTTGCTTTCTCTAAGCCCTATCTGGTCACATTTCTGGAAAAAAGACAACAGTCTTGGGATGTGAAACAACAAGCAACAGTGGCTACATACCCAG
Seq C2 exon
GAACAAAACCCTATAAATATAAAGAATGTAACAAGACCTTTGTTCGGAAGTCACTCCTTATTCAACATCAGAGAGTTCATACAGGAGAGAAACCCTACAAATGTGAACAATGTGGCAAAGCTTTTAGCTGTTCTTCAAGCCTTACCCCACATCAAAGAATTCACACTGGAGAGAAACCCTACAAATGTGAACAGTGTGGTCAGGCTTTTAACTGTTCTTCTCACCTGTATAAGCATCAGAGAATTCACACTGGTGAGAAACCCTATAAATGCCCAGAATGTGGCAAAGCTTTTAACTGGTCTTCAAGCCTTACCCAGCATCAAAGAATTCACAGCGGAGAGAAACCCTACAAATGTGAAGAATGTGGCTTGTCCTTTAACTGTTCTCACCTGTATAGGCACCAGAGAATTCACACGGGTGAAAAACTTTACAAATGCGAAGAATGTGGCAAGGCCTTCAACTGTTCTTCATATCTTAATTACCATCAGATACTTCATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069184-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.013
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.6),PF097235=Zn-ribbon_8=WD(100=10.2),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000089063





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:64981387-64981482 
HIGH PSI
HsaEX6008349
(ZNF117)
Human
(hg19)
chr7:64441765-64441860 
HIGH PSI
HsaEX6008349
(ZNF117)
Rat
(rn6)
chr1:61505814-61505903 
Cow
(bosTau6)
chr18:60466132-60466227 
HIGH PSI
BtaEX6083987
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACAGCAACCTTGTCTCTCTGG

				
R: 
GGGTAAGGCTTGAAGAACAGCT

				
Band lengths: 
168-264

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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