HsaEX6008349 @ hg19
Exon Skipping
Gene
ENSG00000152926 | ZNF117
Description
zinc finger protein 117 [Source:HGNC Symbol;Acc:12897]
Coordinates
chr7:64439109-64442494:-
Coord C1 exon
chr7:64442362-64442494
Coord A exon
chr7:64441765-64441860
Coord C2 exon
chr7:64439109-64439914
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTCAATAAAACAGGTA
3' ss Score
5.72
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTTTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGCATGTGATGTGAGAGAACTACAGAAACCTGGTTTTCTTGGGTGAAG
Seq A exon
GTATTGCTGTCTCTAAGCCAGACCTGATTACCTGTCTGGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTAGCTAAACATTTAG
Seq C2 exon
TTATGTTTTATTATTTTGCCCAACACCTTTGGCCAGAGCAGAACATAAGAGATTCTTTCCAGAAAGTGACCCTAAGAAGATATAGAAAATGTGGATATGAGAATTTACAGTTAAGAAAAGGCTGTAAAAGTGTGGTTGAGTGTAAACAGCACAAAGGAGATTATAGTGGACTTAACCAATGTTTGAAAACTACCTTGAGCAAAATATTTCAATGTAATAAATATGTAGAAGTTTTCCATAAAATTTCAAATTCAAATAGACACAAGATGAGACATACTGAAAATAAACATTTTAAATGTAAAGAATGTCGCAAAACATTTTGCATGCTTTCACACCTAACTCAACATAAAAGAATCCAAACTAGAGTGAATTTCTACAAATGTGAAGCATATGGAAGAGCCTTTAACTGGTCCTCAACCCTTAATAAACATAAGAGAATTCATACTGGAGAAAAACCTTACAAATGTAAAGAATGTGGCAAAGCCTTTAACCAGACCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152926-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF139121=zf-C2H2_6=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF102634=SprT-like=WD(100=14.8),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF102634=SprT-like=WD(100=12.1),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTTATGGATGTGGCCA
R:
ATGTTCTGCTCTGGCCAAAGG
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)