MmuEX6059060 @ mm9

Exon Skipping

Gene

ENSMUSG00000058093 | AA987161

Description

expressed sequence AA987161 [Source:MGI Symbol;Acc:MGI:2145180]

Coordinates

chr13:67690380-67697712:-

Coord C1 exon

chr13:67697586-67697712

Coord A exon

chr13:67696153-67696248

Coord C2 exon

chr13:67690380-67694852

Length

96 bp

Sequences

Splice sites

3' ss Seq

TTTCCTTTTTCCACAAACAGGTC

3' ss Score

11.15

5' ss Seq

CAGGTGTGT

5' ss Score

6.99

Exon sequences

Seq C1 exon

GAAATGCTGTCATTCAAGGATGTGGCCATTGATTTCTCTGCAGAGGAGAGGGAATGCCTTGATCCTGCTCAGTGGAAACTGTACAGGAATGTGATGTTGGAGAATTATGACAATCTTGTGTTCCTGG

Seq A exon

GTCTTACTTCGTCTAAGCCATATCTGGTCACATGTCTGGAGCAAATACAAGAGCCTTCAGATGTGAAAAGAGGAGCAGCTACCTCTATGCTCCCAG

Seq C2 exon

AATGCAGAGAATATGGAAAAGTTTTTGAGTGGTCCAAAGTGTTTCAAAATCACCAGATAATTGACTTAGAAGTGAAGCCCTACAGGAGTGAAGAACGTGCCAAGTCCTTCCATATTCCATCATTAAGTTCTGAAGAGAGCACAATTCATGCAGGAGAAAAACCTTACAAATGTGAAGTTTGTGGCAAGGCCTTCTGCATTCCATTATTACTTTCTAAACACAAGATAATTCATAAAGGAGAGAATCTCTACAAGTGTGAAGTGTGTGGCAAGGCCTTCCAACATCCATCAAGACTTTCCAGACATAAGAAGATTCATTCAGAAGAGAAACCATACAAGTGTGAAGTATGTGGAAAAGCCTTCCACTTTCCATCATTACTTTTGGTACACAAGAGAGTTCATACAGGAGAAAAACCATACAAGTGTGAAGTATGTGGCAAGGCCTTTCATTATCCATCAATACTCTCTAAACACAAGCGAATTCATACAGGAGAGAAACCA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000058093-'4-3,'4-2,5-3=AN

Average complexity

A_S

Mappability confidence:

100%=50=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.007

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF0172213=BolA=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF0013017=C1_1=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF0013017=C1_1=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.6),PF0013017=C1_1=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF0013017=C1_1=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF0013017=C1_1=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF0013017=C1_1=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.6),PF0013017=C1_1=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.5),PF0013017=C1_1=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=2.7)

Main Inclusion Isoform:

ENSMUSP00000012873