MmuEX6070629 @ mm10
Exon Skipping
Gene
ENSMUSG00000033883 | D3Ertd254e
Description
DNA segment, Chr 3, ERATO Doi 254, expressed [Source:MGI Symbol;Acc:MGI:1098769]
Coordinates
chr3:36159522-36170342:+
Coord C1 exon
chr3:36159522-36159648
Coord A exon
chr3:36162632-36162727
Coord C2 exon
chr3:36164056-36170342
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTGCCACTGACCAGGTC
3' ss Score
6.38
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAACAGTTGACCTTCAGGGATGTGGCCATTGATTTTTCTGGAGAGGAATGGGAGTGTCTGGATTCTGAGCAGCAGAATTTGTATACAGATGTGATGTTGGAAAACTATAGGAACCTCGTTTTCCTGG
Seq A exon
GTCTTGCTGTGTCTAAGCCATACCTGGTTACCTGTCTGGAGCAAAGGAAAGAGCCCTGGAATGTAAAGACGCAAAAGACCATGGCCGTGTTCCCAG
Seq C2 exon
CCATGTTTTCTCATCATAGCCAAGACTTTTCACCAGAGCAGAACATAAAGTATTCATTCCAGGAACTCATCTGTGGACCTCGTGGACAGTGTGGCTTTGACGCTTTGTACTTCCCAGGAGAAAGGGACTGTGTTGAGGAGGGTGACATCCTGAGAACCTGCTATAACGGGCACAACCCATTTCTGACAGCTGGCAACAGCAAAAGCTTTACTCCCAGGAGAGATCGGGCACAAGAGATGGCTCACAAAAACCCTCAGGTGACACCAGTTACTTGTGAGGAGCCGTGCGCTTCAGTCATTAAACAGCAGAGTCAGTTTTTGAAGCAGACCCCTTCTTTCAAAGATAATTTGGAAAATCCACAGAGGGTTCTAGTTAATTCTTCAACTACCGACTTCAACAATTTCAAGTGTAGCTTTGGGCTGAGCTTTCATTCAAACATTTTTGTAGATGGGGAACTTAAAAATGAAGGAAAACATTCTAAATGTAATCAATTTGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033883-'2-2,'2-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF097235=Zn-ribbon_8=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGGATTCTGAGCAGCA
R:
CAAAGCGTCAAAGCCACACTG
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types