MmuEX6070629 @ mm9

Exon Skipping

Gene

ENSMUSG00000033883 | Gm9760

Description

DNA segment, Chr 3, ERATO Doi 254, expressed [Source:MGI Symbol;Acc:MGI:1098769]

Coordinates

chr3:36058444-36065142:+

Coord C1 exon

chr3:36058444-36058570

Coord A exon

chr3:36061554-36061649

Coord C2 exon

chr3:36062978-36065142

Length

96 bp

Sequences

Splice sites

3' ss Seq

TTCTCTTTGCCACTGACCAGGTC

3' ss Score

6.38

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GAACAGTTGACCTTCAGGGATGTGGCCATTGATTTTTCTGGAGAGGAATGGGAGTGTCTGGATTCTGAGCAGCAGAATTTGTATACAGATGTGATGTTGGAAAACTATAGGAACCTCGTTTTCCTGG

Seq A exon

GTCTTGCTGTGTCTAAGCCATACCTGGTTACCTGTCTGGAGCAAAGGAAAGAGCCCTGGAATGTAAAGACGCAAAAGACCATGGCCGTGTTCCCAG

Seq C2 exon

CCATGTTTTCTCATCATAGCCAAGACTTTTCACCAGAGCAGAACATAAAGTATTCATTCCAGGAACTCATCTGTGGACCTCGTGGACAGTGTGGCTTTGACGCTTTGTACTTCCCAGGAGAAAGGGACTGTGTTGAGGAGGGTGACATCCTGAGAACCTGCTATAACGGGCACAACCCATTTCTGACAGCTGGCAACAGCAAAAGCTTTACTCCCAGGAGAGATCGGGCACAAGAGATGGCTCACAAAAACCCTCAGGTGACACCAGTTACTTGTGAGGAGCCGTGCGCTTCAGTCATTAAACAGCAGAGTCAGTTTTTGAAGCAGACCCCTTCTTTCAAAGATAATTTGGAAAATCCACAGAGGGTTCTAGTTAATTCTTCAACTACCGACTTCAACAATTTCAAGTGTAGCTTTGGGCTGAGCTTTCATTCAAACATTTTTGTAGATGGGGAACTTAAAAATGAAGGAAAACATTCTAAATGTAATCAATTTGAGAAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000033883-'0-1,'0-0,1-1=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.108

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF0013017=C1_1=WD(100=7.8),PF0136316=FYVE=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF097235=Zn-ribbon_8=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=3.6),PF0013017=C1_1=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF0013017=C1_1=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6)

Main Inclusion Isoform:

ENSMUSP00000131779