HsaEX0074252 @ hg19

Exon Skipping

Gene

ENSG00000160352 | ZNF714

Description

zinc finger protein 714 [Source:HGNC Symbol;Acc:27124]

Coordinates

chr19:21280991-21305954:+

Coord C1 exon

chr19:21280991-21281117

Coord A exon

chr19:21281618-21281716

Coord C2 exon

chr19:21299613-21305954

Length

99 bp

Sequences

Splice sites

3' ss Seq

GCTATTTACTTTTAATAAAGCAG

3' ss Score

-0.7

5' ss Seq

CAGGTAGGT

5' ss Score

10.28

Exon sequences

Seq C1 exon

GAGACGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGGAATGCCTGAACCCTGCTCAGCAGAATTTATATATGAATGTGATGTTAGAGAACTACAAAAACCTGGTCTTCTTGG

Seq A exon

CAGGTATTGCTGTCTCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAGAGCCCTGGAATATGAAGATATGTGAGATGGTGGATGAATCCCCAG

Seq C2 exon

CTATGTGTTCTTCTTTTACCAGAGACCTTTGGCCAGAGCAAGACATAAAAGATTCTTTTCAACAAGTGATACTGAGAAGACATGGCAAATGTGAACATGAGAATTTACAGTTAAGAAAAGGCTCCGCAAATGTGGTTGAGTGTAAGGTGTACAAAAAAGGTTATGAACTAAACCAGTGTTTGACAACTACCCAGAGCAAAATATTTCCATGTGATAAATATATAAAAGTCTTTCATAAAATTTTCAATTCAAATAGACACAAGACAAGACATACTGGAGAGAAACCTTTCAAATGTAAAAAATGTGATGAATCATTTTGCATGCTTTTACACCTACATCAACATAAAAGAATTCATATTAGAGAGAATTCTTACCAATGTGAAGAATGTGACAAAGTGTTTAAGCGGTTCTCAACCCTTACTAGACACAAGAGAGTTCATACTGGAGAGAAACCCTTCAAATGTGAAGAATGTGGCAAAGCTTTTAAGCACTCCTCAACC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000160352-'2-5,'2-2,3-5

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

Show structural model

Features

Disorder rate (Iupred):

C1=0.000 A=0.010 C2=0.046

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=100.0)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0048912=IL6=WD(100=15.4),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF127602=Zn_Tnp_IS1595=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF127602=Zn_Tnp_IS1595=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF102634=SprT-like=WD(100=17.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF102634=SprT-like=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)

Main Inclusion Isoform:

ENSP00000468862

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

ENSP00000291770, ENSP00000469616, ENSP00000470378, ENSP00000471430, ENSP00000471430f7204A, ENSP00000472072, ENSP00000472368

Other Skipping Isoforms:

NA

Associated events

Other assemblies

hg38

Conservation

Mouse

(mm10)

chr13:67295747-67295845

Mouse

(mm9)

chr13:67396683-67396781

Rat

(rn6)

No conservation detected

Cow

(bosTau6)

chr18:57703909-57704006

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

chrUn_random:28977932-28977994

Zebrafish

(danRer10)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

TTGACATTTAGGGATGTGGCCA

R:

ATGTCTTGCTCTGGCCAAAGG

Band lengths:

167-266

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS

Genotype-Tissue Expression Project (GTEx)
Autistic and control brains
Pre-implantation embryo development

Other AS DBs:

FasterDB (Includes CLIP-seq data)

AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)

APPRIS (Selection of principal isoform)

DEU primates (Only for human)

Special

HsaEX0074252 @ hg19

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS