HsaEX7010392 @ hg38
Exon Skipping
Gene
ENSG00000160352 | ZNF714
Description
zinc finger protein 714 [Source:HGNC Symbol;Acc:HGNC:27124]
Coordinates
chr19:21098815-21123151:+
Coord C1 exon
chr19:21098815-21098910
Coord A exon
chr19:21109623-21109644
Coord C2 exon
chr19:21116807-21123151
Length
22 bp
Sequences
Splice sites
3' ss Seq
GTAATTTAATTTTATTTCAGGAT
3' ss Score
7.62
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTATTGCTGTCTCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAGAGCCCTGGAATATGAAGATATGTGAGATGGTGGATGAATCCCCAG
Seq A exon
GATACATGTGCAGGATGTGCAG
Seq C2 exon
CTATGTGTTCTTCTTTTACCAGAGACCTTTGGCCAGAGCAAGACATAAAAGATTCTTTTCAACAAGTGATACTGAGAAGACATGGCAAATGTGAACATGAGAATTTACAGTTAAGAAAAGGCTCCGCAAATGTGGTTGAGTGTAAGGTGTACAAAAAAGGTTATAATGAACTAAACCAGTGTTTGACAACTACCCAGAGCAAAATATTTCCATGTGATAAATATATAAAAGTCTTTCATAAAATTTTCAATTCAAATAGACACAAGACAAGACATACTGGAGAGAAACCTTTCAAATGTAAAAAATGTGATGAATCATTTTGCATGCTTTTACACCTACATCAACATAAAAGAATTCATATTAGAGAGAATTCTTACCAATGTGAAGAATGTGACAAAGTGTTTAAGCGGTTCTCAACCCTTACTAGACACAAGAGAGTTCATACTGGAGAGAAACCCTTCAAATGTGAAGAATGTGGCAAAGCTTTTAAGCACTCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160352-'9-15,'9-12,13-15=AN
Average complexity
A_C3
Mappability confidence:
100%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.063
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATCACCAGTCTAGAGCA
R:
CTTGCTCTGGCCAAAGGTCTC
Band lengths:
116-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains