HsaALTA1038938-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000160352 | ZNF714
Description
zinc finger protein 714 [Source:HGNC Symbol;Acc:HGNC:27124]
Coordinates
chr19:21098815-21117084:+
Coord C1 exon
chr19:21098815-21098910
Coord A exon
chr19:21116807-21116828
Coord C2 exon
chr19:21116829-21117084
Length
22 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GTTGTTTGTATTTCTTTCAGCTA
3' ss Score
8.17
Exon sequences
Seq C1 exon
GTATTGCTGTCTCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAGAGCCCTGGAATATGAAGATATGTGAGATGGTGGATGAATCCCCAG
Seq A exon
CTATGTGTTCTTCTTTTACCAG
Seq C2 exon
AGACCTTTGGCCAGAGCAAGACATAAAAGATTCTTTTCAACAAGTGATACTGAGAAGACATGGCAAATGTGAACATGAGAATTTACAGTTAAGAAAAGGCTCCGCAAATGTGGTTGAGTGTAAGGTGTACAAAAAAGGTTATAATGAACTAAACCAGTGTTTGACAACTACCCAGAGCAAAATATTTCCATGTGATAAATATATAAAAGTCTTTCATAAAATTTTCAATTCAAATAGACACAAGACAAGACATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160352-9-16,9-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=86.2)
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCTCTAAGCAAGACCCG
R:
ATGTCTTGCTCTGGCCAAAGG
Band lengths:
115-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains