HsaALTA1042291-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000165699 | TSC1
Description
tuberous sclerosis 1 [Source:HGNC Symbol;Acc:HGNC:12362]
Coordinates
chr9:132928767-132935095:-
Coord C1 exon
chr9:132935033-132935095
Coord A exon
chr9:132928953-132929029
Coord C2 exon
chr9:132928767-132928952
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCATTGAACACGTGCATTAGTTT
3' ss Score
-2.13
Exon sequences
Seq C1 exon
TGACCATGAAAGACACCAGGTTGACAGCACTGGAAACTGAAGTACCAGTTGTCGCTAGAACAG
Seq A exon
TTTGTCTTGCAGGTATTTTCTTTTTTTATGGAGAAAAATGGGGCCATTTAGTGACTGTTCATCTTCCTTTTTCTCAG
Seq C2 exon
TTTGGTAGTGGCCCCAATGAAGAACCTTCAGAACCTGTAGCACACGTCCTGGAGCCAGCACAGCGCCTTCGAGCGAGAGAATGGCCCAACAAGCAAATGTCGGGGAGCTTCTTGCCATGCTGGACTCCCCCATGCTGGGTGTGCGGGACGACGTGACAGCTGTCTTTAAAGAGAACCTCAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165699-5-15,5-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF043887=Hamartin=PU(25.6=94.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACACCAGGTTGACAGCAC
R:
AAGAAGCTCCCCGACATTTGC
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains